Recent changes:
Jan 04 2012, 11:35 AM Added seven variants for Europeans and one for East Asians
Nov 24 2009, 02:40 PM The publication for lifetime risk has been changed. Values used for the risk model have been modified accordingly
Nov 24 2009, 02:40 PM Added one risk variant for new customers of European descent
These are the results of calculations comparing your genetic sequence to sequence of participants in studies published in the world literature on genetic risk for this disease.
How deCODEme calculates genetic risk
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Based on the nature of your questions, we may refer you to a genetic counselor.
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Population: Males of European ancestry
| Locus |
Chromo- some |
Variant / SNP |
My Codes |
Relative Risk |
Genotype frequency |
Num. Cases / Num. Controls |
| ADAMTS7 |
15 |
rs11072806 |
N/A
|
|
|
50258 / 91304 |
|
Schunkert, H et al. Nat Genet. 2011 Mar 6;43(4):333-8.
|
| CDKN2A / CDKN2B |
9 |
rs10757278 |
AG
|
0.98 |
49.9% |
4587 / 12767 |
|
Helgadottir, A et al. Science. 2007 Jun 8;316(5830):1491-3. Epub 2007 May 3.
|
| CELSR2 / PSRC1 |
1 |
rs599839 |
AG
|
0.86 |
35.4% |
2875 / 4644 |
|
Samani, NJ et al. N Engl J Med. 2007 Aug 2;357(5):443-53. Epub 2007 Jul 18.
|
| COL4A1-COL4A2 |
13 |
rs4773144 |
N/A
|
|
|
50258 / 91304 |
|
Schunkert, H et al. Nat Genet. 2011 Mar 6;43(4):333-8.
|
| CXCL12 |
10 |
rs1746048 |
CC
|
1.05 |
70.6% |
12544 / 44118 |
|
Kathiresan, S et al. Nat Genet. 2009 Mar;41(3):334-41. Epub 2009 Feb 8.
|
| HHIPL1 |
14 |
rs12436072 |
N/A
|
|
|
50258 / 91304 |
|
Schunkert, H et al. Nat Genet. 2011 Mar 6;43(4):333-8.
|
| LIPA |
10 |
rs1412444 |
N/A
|
|
|
25000 / 22000 |
|
C4D Consortium. Nat Genet. 2011 Mar 6;43(4):339-44.
|
| MIA3 |
1 |
rs2291834 |
CC
|
1.07 |
51.8% |
12544 / 44118 |
|
Kathiresan, S et al. Nat Genet. 2009 Mar;41(3):334-41. Epub 2009 Feb 8.
|
| MRAS |
3 |
rs9818870 |
CC
|
0.96 |
71.6% |
19407 / 21366 |
|
Erdmann, J et al. Nat Genet. 2009 Mar;41(3):280-2. Epub 2009 Feb 8.
|
| PDGFD |
11 |
rs974819 |
N/A
|
|
|
25000 / 22000 |
|
C4D Consortium. Nat Genet. 2011 Mar 6;43(4):339-44.
|
| PHACTR1 |
6 |
rs7739181 |
GG
|
1.08 |
42.2% |
12544 / 44118 |
|
Kathiresan, S et al. Nat Genet. 2009 Mar;41(3):334-41. Epub 2009 Feb 8.
|
| RASD1-SMCR3-PEMT |
17 |
rs12936587 |
N/A
|
|
|
50258 / 91304 |
|
Schunkert, H et al. Nat Genet. 2011 Mar 6;43(4):333-8.
|
| SH2B3 |
12 |
rs3184504 |
CC
|
0.89 |
30.2% |
6650 / 40621 |
|
Gudbjartsson DF, et al. Nat Genet. 2009 Feb 8. [Epub ahead of print]
|
| SLC5A3 / MRPS6 / KCNE2 |
21 |
rs9982601 |
CT
|
1.14 |
22.6% |
12544 / 44118 |
|
Kathiresan, S et al. Nat Genet. 2009 Mar;41(3):334-41. Epub 2009 Feb 8.
|
| WDR12 |
2 |
rs6725887 |
TT
|
0.95 |
74.0% |
12544 / 44118 |
|
Kathiresan, S et al. Nat Genet. 2009 Mar;41(3):334-41. Epub 2009 Feb 8.
|
| ZC3HC1 |
7 |
rs11556924 |
N/A
|
|
|
50258 / 91304 |
|
Schunkert, H et al. Nat Genet. 2011 Mar 6;43(4):333-8.
|
View any SNP in the genome browser
Clicking on the SNP name will launch and/or sync the browser
The figure below shows the genomic location of the relevant variants, represented as stripes across the chromosome. Their color indicates your relative risk (red: high risk, yellow: medium risk, green: low risk).
Hover over the variants with the mouse cursor to obtain more detailed information.
These are the results of calculations comparing your genetic sequence to sequence of participants in studies published in the world literature on genetic risk for this disease. Read more about how deCODEme calculates risks.
This test was developed and its performance characteristics determined by the deCODE genetics Diagnostic Laboratory. It has not been cleared or approved by the U. S. Food and Drug Administration (FDA).